PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000115.1_g00034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family E2F/DP
Protein Properties Length: 319aa    MW: 35795.9 Da    PI: 8.4549
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000115.1_g00034.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.15.4e-221277171
                  E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                             rk+ksL+ll+++fl+l+ ++  +++ l+++a +L    v  +rRRiYDi+NVLe+++++++++kn + wkg
  Itr_sc000115.1_g00034.1 12 RKQKSLGLLCSNFLSLYDREGVETIGLDDAAMRL---GV--ERRRIYDIVNVLESVGVLARRAKNIYMWKG 77
                             79*****************999************...**..****************************98 PP

2E2F_TDP49.38.1e-161071672171
                  E2F_TDP  21 eegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                              + ++++l+++ak L+ +      +knk+RR+YDi+NVL++++ iek     ++k+++rw g
  Itr_sc000115.1_g00034.1 107 QMEMICLEDAAKILLGDgrppsMTKNKVRRLYDIANVLSSMKFIEKtqhpeTRKPAFRWLG 167
                              45899****************9999*********************9999999******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.7E-251078IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.66E-161175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-251277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-191377IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013721.8E-1396167IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-12108167IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-13108168IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-8109168IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASKDSGSVY SRKQKSLGLL CSNFLSLYDR EGVETIGLDD AAMRLGVERR RIYDIVNVLE  60
SVGVLARRAK NIYMWKGFAV VPNVLQELKE EGLKERIGAS DRSLSLQMEM ICLEDAAKIL  120
LGDGRPPSMT KNKVRRLYDI ANVLSSMKFI EKTQHPETRK PAFRWLGLEG KSADMSEINL  180
DCNQSKKRVF GTELTNTPIK RCKLVPLMDG DAAETKLQAQ IKCESLDCEA NRSNLDPGSR  240
TSAKGYQFGP FAPVSVPKDE AHESGHRSKL LSDCESLAST YRPQYHNQAL RELFHHYVEA  300
WSSWYSEVAA GKNPIEVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A7e-151192388Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775271.11e-135PREDICTED: E2F transcription factor-like E2FE isoform X2
RefseqXP_016509350.11e-135PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ46e-87E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLM5WBU31e-109M5WBU3_PRUPE; Uncharacterized protein
STRINGVIT_14s0066g02370.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-88DP-E2F-like 1